Index

centrifugal force

chem.dat

5.7

chemical composition

5.4.5

chemical reaction network

1 | 3.6 | 5.4.9 | 5.7 | 7.3

CINES

3.7.16

CO5BOLD

1 | 9

Compaq

compilation

3 | 3.1 | 3.2 to 3.7.18

compiler

alpha

3.6 | 3.7.5

Cray

3.7.4

g95

3.7.13

gfortran

3.7.14

Hewlett-Packard

3.7.6 | 3.7.7

Hitachi SR8000

3.7.8

IBM

3.7.9

Intel

3.7.11

NEC

SX-5: 3.7.15
SX-6: 3.7.15
SX-8: 3.7.15

PathScale

3.7.12

PGI

3.7.10

SGI

3.7.16

UKAFF: 3.7.17

Sun

3.7.18

compiler macro

3.6 to 3.6

category: 3.6
gasinter_l01: 3.6
gasinter_l02: 3.6
IDF: 3.6
MSrad_raytas: 3.6
rhd_shortrad_lambda_l01: 3.6
rhd_bound_t01: 3.6
rhd_box_arrays01: 3.6
rhd_box_bmag01: 3.6
rhd_box_grav01: 3.6
rhd_box_quc01: 3.6
rhd_hyd_entropyfix_p01: 3.6
rhd_hyd_gravcorr_p01: 3.6
rhd_hyd_roe1d_l01: 3.6
rhd_hyd_upwind_p01: 3.6
rhd_r01: 3.6
rhd_r02: 3.6
rhd_r03: 3.6
rhd_rad3d_dir_t01: 3.6
rhd_rad3d_fromray_l01: 3.6
rhd_rad3d_r02: 3.6
rhd_rad3d_solve_t01: 3.6
rhd_rad3d_step_t01: 3.6
rhd_rad3d_toray_l01: 3.6
rhd_roe1d_flux_l01: 3.6
rhd_roe1d_flux_t01: 3.6
rhd_roe1d_slope_l01: 3.6
rhd_roe1d_step_t01: 3.6
rhd_shortrad_dir1_l01: 3.6
rhd_shortrad_dir_l02: 3.6
rhd_shortrad_dtauop_l01: 3.6
rhd_shortrad_dtauop_l02: 3.6
rhd_shortrad_formal_l01: 3.6
rhd_shortrad_formal_t01: 3.6
rhd_shortrad_operator_l01: 3.6
rhd_shortrad_operator_l02: 3.6
rhd_shortrad_step_t01: 3.6
rhd_vis_density_p01: 3.6
rhd_vis_t01: 3.6
timing_c_factor: 3.6
timing_c_range: 3.6
timing_r_type: 3.6
uio_switch_crayxmp_l01: 3.6
uio_switch_ieeebe_l01: 3.6
uio_switch_ieee_l01: 3.6
uio_switch_ieeele_l01: 3.6
uio_switch_native_l01: 3.6
uio_switch_open_l01: 3.6
uio_switch_system_l01: 3.6

configure script

3.5 to 3.5 | 3.6 | 5.6

control variables: 3.5
F90_BASEPATH: 3.2 | 3.5
F90_CHEM: 3.5
F90_COMPILER: 3.5
F90_DEBUG: 3.5
F90_DUST: 3.5
F90_HION: 3.5
F90_LHDRAD: 3.5
F90_MACHINE: 3.5
F90_MHD: 3.5
F90_MSRAD: 3.5
F90_PARALLEL: 3.5
F90_POSTFLAGS: 3.5
F90_PREFLAGS: 3.5
F90_SHORTRAD: 3.5

Coriolis force

craSHi

3.7.4

Cray

3.7.4 | 5.4.14 | 5.4.14 | 10

data format

UIO: 4

directional splitting

1 | 5.4.7

double precision

3.7.3 | 3.7.11

dust

1 | 3.6 | 5.4.9

entropy fix

3.6

environment variables

3.6 | 3.7.1 | 3.7.1

EOS

2.3.3 | 5.4.5 | 5.4.5

equation of state

2.3.3 | 5.4.5 | 5.4.5

files

data files, table of

Fortran files, table of

3.4 | 3.4

HION

IDL

UIO: 4.7

input

chem.dat: 5.7
EOS: 5.4.5
opacities: 5.4.6
rhd.cont: 5.5
rhd.dump: 5.5
rhd.par: 5.4
rhd.stop: 5.5

output

rhd.done: 5.5
rhd.out: 5.6
rhd.snap: 5.5

rhd.exe

3.2 | 3.2

fluxes

5.3

formatted

4.3.1

Fortran

1 | 3.4 | 4.1 | 4.5

g95

3.7.13

gfortran

3.7.14

HD

2.1 | 5.4.7

Hewlett-Packard

3.7.6 | 3.7.7 | 10

HION

input: 5.8
output: 5.9

Hitachi

3.7.8

HP

hydrodynamics

1 | 2.1 | 2.1 | 5.4.7

hydrodynamics routines

3.4

hydrogen ionization

1 | 3.6 | 5.4.9 | 7.3

IBM

3.7.9 | 10

IDL

4.1 | 7 | 10

CAT: 2.2 | 7.4
combox.pro: 7.2.5
eosbox.pro: 7.2.5
UIO routines: 4.7
uio_data.pro: 4.7.2
uio_datasetlist_rd.pro: 4.7.3
uio_dataset_rd.pro: 4.7.3
uio_dataset_rd.pro: 4.7.3
uio_init.pro: 4.7.1
uio_struct_rd.pro: 4.7.3

inlining

3.7 | 3.7.2

alpha: 3.7.5
Cray VX1: 3.7.4
IBM: 3.7.9
Intel compiler on Linux: 3.7.11
PGI compiler on Linux: 3.7.10
SGI: 3.7.16
Sun: 3.7.18

input

chemical reaction network: 5.7
HION: 5.8

Intel

3.7.11 | 10

Itanium

3.7.7

LHDrad

1 | 3.4 | 5.4.13 | 5.4.13

Linux

3.7.10 | 3.7.11 | 3.7.12 | 3.7.13 | 3.7.14 | 10

little_endian

3.7.5 | 3.7.10 | 3.7.11 | 3.7.12 | 3.7.13 | 3.7.14 | 4.3.1 | 4.5.1

Loadleveler

3.7.9

Macintosh

3.7.11 | 5.4.8

magnetic fields

1 | 3.6 | 7.3

magnetohydrodynamics

2.2

makefile

configure script: 3.5
UIO: 4.5.3

MHD

2.2 | 5.4.7

molecules

1 | 3.6 | 5.4.9 | 7.3

MSrad

1 | 3.4 | 3.6 | 3.7.5 | 3.7.8 | 3.7.10 | 3.7.11 | 3.7.18 | 5.4.4 | 5.4.13 | 5.4.13

cell centering: 5.1

NEC

SX-5: 3.7.15
SX-6: 3.7.15
SX-8: 3.7.15

OMP_NUM_THREADS

3.7.1

OMP_SCHEDULE

3.7.1

opacities

5.4.6

OpenMP

1 | 3.7 | 3.7.1

activation in configure script: 3.5 | 3.7.1
chunk size: 5.4.7 | 5.4.8
OMP_NUM_THREADS: 3.7.1
OMP_SCHEDULE: 3.7.1
on Cray VX1: 3.7.4
on Hitachi: 3.7.8
on HP: 3.7.6
on Linux gfortran: 3.7.14
on Linux Intel: 3.7.11
on Linux Pathscale: 3.7.12
on NEC: 3.7.15
on SGI: 3.7.16
on Sun: 3.7.18

operator splitting

1 | 5.4.7

output

chunk data sets: 5.2
full data sets: 5.1
HION: 5.9
mean data: 5.3

PathScale

3.7.12

PGI

precision

double: 3.7.3 | 3.7.11
single: 3.7.3

quc

3.5 | 3.6 | 5.4.7 | 5.7

radiation transport

1 | 5.4.13

README

3.2

rhd.cont

rhd.done

rhd.dump

rhd.exe

3.2 | 3.2

rhd.out

5.6

rhd.par

5 | 5.4 to 5.4.17

boundary conditions

character bottom_bound

character bottom_bound_mag

character chem_reacfile

character chem_reacpath

character description

5.4.2

character dustscheme

dust_bins_01: 5.4.12
dust_k3mon_03: 5.4.11
dust_moment04_c2: 5.4.10

character eosfile

5.4.5

character eospath

5.4.5

character file_id

5.4.2

character grav_mode

character hdcheckflux

character hdscheme

character hdsplit

character hdtimeintegrationscheme

character heat_mode

character hion_abufile

character hion_atomfile

character hion_datapath

5.4.9 | 5.8

character hion_edensfile

character hion_pffile

character history

5.4.2

character infile_start

character opafile

5.4.6

character opapath

5.4.6

character outconv_end

character outconv_fine

character outconv_full

character outconv_mean

character outfile_chu1

character outfile_end

character outfile_fine

character outfile_full

character outfile_mean

character outform_end

character outform_fine

character outform_full

character outform_mean

character radpressure

character radraybase

character radraystar

character radscheme

character reconstruction

character side_bound

character side_bound_mag_x1

character side_bound_mag_x2

character top_bound

character top_bound_mag

chemical reaction network

dust

effective temperature

5.4.3 | 5.4.4

equation of state

fileform uio

gravity

header

hydrodynamics

hydrogen ionization

input/output

integer dtimestep_out_fine

integer endtimestep

integer hion_chunks

integer istep_in_start

integer n_outslicedim_mean

integer n_dustgrainradius

5.4.11 | 5.4.12

integer n_hydcellsperchunk

3.7.8 | 5.4.7

integer n_hyditer

integer n_hydmaxiter

integer n_magdiffbottom

integer n_magdiffside

integer n_magdifftop

integer n_orderconstrainedtransport

integer n_radband

integer n_raditer

integer n_radmaxiter

integer n_radminiter

integer n_radoutput

integer n_radphi

integer n_radrsyslevel

integer n_radsubray

integer n_radtaurefine

integer n_radtheta

integer n_radthickpoint

integer n_rescellsperchunk

integer n_viscellsperchunk

integer outfile_chu1

integer plustimestep

integer starttimestep

luminosity

MHD

molecules

opacities

process management

radiation transport

reading in IDL

real abux

real abuy

real ar_dustgrainradius

5.4.11 | 5.4.12

real b1_inflow

real beta_inv

real c_magthetab

real c_radkappasmooth

real c_coredrag

real c_courant

real c_courantmax

real c_dust01

5.4.10 | 5.4.11 | 5.4.12

real c_dust02

5.4.10 | 5.4.11 | 5.4.12

real c_dust03

5.4.10 | 5.4.11 | 5.4.12

real c_dust04

5.4.10 | 5.4.11 | 5.4.12

real c_dust05

5.4.11

real c_dust06

5.4.11 | 5.4.12

real c_dust07

real c_dust08

real c_dust09

real c_dust0X

real chem_abumetal

real c_hptopfactor

real c_hydexpcourant

real c_hydexpcourantmax

real c_hydpredfactor

real c_magphib

real c_maxeichange

real c_pchange

real cputime

real cputime_remainlimit

real c_radcourant

real c_radcourantmax

real c_raddcool

real c_raddinci

real c_radhtautop

real c_radimplicitmu

real c_raditereps

real c_raditerstep

real c_radmaxeichange

real c_radscool

real c_radtcool

real c_radthintimefac

real c_radtinci

real c_radtintminfac

real c_radtsmooth

real c_radtvis

real c_radtvisdtau

real c_resB

real c_resBconst

real c_rescourant

real c_rescourantmax

real c_resepsilon

real c_rhochangetop

real c_schange

real c_slopered

real c_tchange

real c_tsurf

real c_visartificial

real c_visbound

real c_viscourant

real c_viscourantmax

real c_visdrag

real c_visexpansion

real c_vislinear

real c_visneu1

real c_visneu2

real c_visp2pcoeff

real c_visp2pincl1

real c_visp2pincl2

real c_visprturb

real c_vissmagorinsky

real c_vistensordiag

real c_vistensordiv

real c_vistensoroff

real dtime_out_hion

5.4.9 | 5.9

real dtime_incmax

real dtime_max

real dtime_min

real dtime_min_stop

real dtime_out_end

real dtime_out_full

real dtime_out_mean

real dtime_start

real endtime

real gamma

real grav

real luminositypervolume

real mass_star

real nu_rotation

real plustime

real qmol

real r0_grav

real r1_grav

real r1_rad

real rho_min

real s_inflow

real starttime

real teff

real va_max

tensor viscosity

time step

rhd.snap

rhd.stop

Roe solver

3.7.4 | 3.7.5 | 3.7.8 | 3.7.10

rotation

SGI

3.7.16 | 10

short characteristics

3.7.10

SHORTrad

1 | 3.4 | 5.4.13 | 5.4.13

single precision

3.7.3

Sparc

Sun

3.7.18 | 10

tensor viscosity

tensor viscosity routine

3.4

thermodynamic relations

2.3

adiabatic gradient: 2.3.2 | 2.3.4
enthalpy: 2.3.1
entropy: 2.3.4
internal energy: 2.3.1 | 2.3.4
polytropic gas: 2.3.5
sound speed: 2.3.4 | 2.3.4
specific heats: 2.3.2 | 2.3.4 | 2.3.4

time step

timing statistics

3.6 | 3.6 | 5.6

total energy flux

5.3.2

UIO

4 to 4.7.3

conversion type: 4.3.1 | 4.3.1
example: 4.2 | 4.3.2 | 4.3.3
format: 4.3.1
Fortran: 4.5
IDL: 4.7
makefile: 4.5.3
record length unit: 3.7.5
uiocat: 3.7.3 | 4.6.3
uio_datasetlist_rd.pro: 4.7.3
uio_dataset_rd.pro: 4.7.3
uio_dataset_rd.pro: 4.7.3
uioinfo: 4.6.4
uio_init.pro: 4.7.1
uiolook: 4.6.2
uio_mac_module: 4.5.1
uio_struct_rd.pro: 4.7.3
UNIX scripts: 4.6

UKAFF

3.7.17

unformatted

4.3.1

UNIX

viscosity

point-to-point: 5.4.8
tensor: 3.4 | 3.6 | 5.4.8

xb1

xb2

xb3

xc1

xc2